SNP Profiles matching NA 26

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_Input profile	CC	AG	CG	TT	TT	CC	TT	TT	CC	CC	AA	AG	CT	AG
1._NA_26	CC	AA	CG	TT	TT	CC	TT	TT	CC	CC	AA	AG	CT	AG
2._NA_26	CC	AA	CG	TT	TT	CC	TT	TT	CC	CC	AA	AG	CT	AG
3._NA_26	CC	AA	CG	TT	TT	CC	TT	TT	CC	CC	AA	AG	CT	AG
4._NA_26	CC	AA	CG	TT	TT	CC	TT	TT	CC	CC	AA	AG	CT	AG
5._NA_26	CC	AA	CG	TT	TT	CC	TT	TT	CC	CC	AA	AG	CT	AG
6._GC-04-021-2-03	CC	AA	CG	TT	TT	CC	TT	TT	CC	CC	AA	AG	CT	AG
7._GC-04-021-2-03	CC	AA	CG	TT	TT	CC	TT	TT	CC	CC	AA	AG	CT	AG
8._GC-04-021-2-03	CC	AA	CG	TT	TT	CC	TT	TT	CC	CC	AA	AG	CT	AG
9._GC-04-021-2-03	CC	AA	CG	TT	TT	CC	TT	TT	CC	CC	AA	AG	CT	AG
10._GC-04-021-2-03	CC	AA	CG	TT	TT	CC	TT	TT	CC	CC	AA	AG	CT	AG
11._RUQ_1230	_	AA	CG	TT	_	_	_	TT	_	_	_	_	CT	AG
12._NA_33	CC	AG	CG	TT	TT	CC	TT	TT	CC	CC	AA	AG	CT	AG
13._IMC_14	CC	AG	CG	TT	TT	_	TT	_	CC	CC	AA	GG	CT	AA
14._GC-03-030-3-09	CC	AG	CG	TT	TT	_	TT	_	CC	CC	AA	GG	CT	AA

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	CT	AA	GG	CT	CC	CC	GG	AA	CC	AC	GG	GG	CT	CC
1._NA_26	CT	AA	GG	CT	CC	CC	GG	AA	CC	AC	GG	GG	CT	CC
2._NA_26	CT	AA	GG	CT	CC	CC	GG	AA	CC	AC	GG	GG	CT	CC
3._NA_26	CT	AA	GG	CT	CC	CC	GG	AA	CC	AC	GG	GG	CT	CC
4._NA_26	CT	AA	GG	CT	CC	CC	GG	AA	CC	AC	GG	GG	CT	CC
5._NA_26	CT	AA	GG	CT	CC	CC	GG	AA	CC	AC	GG	GG	CT	CC
6._GC-04-021-2-03	CT	AA	GG	CT	CC	CC	GG	AA	CC	AC	GG	GG	CT	CC
7._GC-04-021-2-03	CT	AA	GG	CT	CC	CC	GG	AA	CC	AC	GG	GG	CT	CC
8._GC-04-021-2-03	CT	AA	GG	CT	CC	CC	GG	AA	CC	AC	GG	GG	CT	CC
9._GC-04-021-2-03	CT	AA	GG	CT	CC	CC	GG	AA	CC	AC	GG	GG	CT	CC
10._GC-04-021-2-03	CT	AA	GG	CT	CC	CC	GG	AA	CC	AC	GG	GG	CT	CC
11._RUQ_1230	_	_	_	_	CC	CC	GG	_	CC	AC	GG	GG	CT	CC
12._NA_33	CT	AA	GG	CC	CC	CC	GG	AA	CT	AA	GG	GG	CT	CC
13._IMC_14	_	AA	GG	CC	CC	CC	GG	_	CC	AA	GG	GG	CT	CC
14._GC-03-030-3-09	_	AA	GG	CC	CC	CC	GG	_	CC	AA	GG	GG	CT	CC

	29	30	31	32	33	34	35	36	37	38	39	40
_Input profile	AA	GG	AT	CT	AG	CG	AA	CT	GG	AC	TT	GG	X_X	X_X
1._NA_26	AA	GG	AT	CT	AG	CG	AA	CT	GG	AC	TT	GG	X_X	X_X
2._NA_26	AA	GG	AT	CT	AG	CG	AA	CT	GG	AC	TT	GG	X_X	X_X
3._NA_26	AA	GG	AT	CT	AG	CG	AA	CT	GG	AC	TT	GG	X_X	X_X
4._NA_26	AA	GG	AT	CT	AG	CG	AA	CT	GG	AC	TT	GG	X_X	X_X
5._NA_26	AA	GG	AT	CT	AG	CG	AA	CT	GG	AC	TT	GG	X_X	X_X
6._GC-04-021-2-03	AA	GG	AT	CT	AG	CG	AA	CT	GG	AC	TT	GG	X_X	X_X
7._GC-04-021-2-03	AA	GG	AT	CT	AG	CG	AA	CT	GG	AC	TT	GG	X_X	X_X
8._GC-04-021-2-03	AA	GG	AT	CT	AG	CG	AA	CT	GG	AC	TT	GG	X_X	X_X
9._GC-04-021-2-03	AA	GG	AT	CT	AG	CG	AA	CT	GG	AC	TT	GG	X_X	X_X
10._GC-04-021-2-03	AA	GG	AT	CT	AG	CG	AA	CT	GG	AC	TT	GG	X_X	X_X
11._RUQ_1230	AA	_	AT	CT	AG	CG	AA	CT	GG	AC	_	_	X_X	X_X
12._NA_33	AA	GG	AT	TT	AG	CG	AA	CT	GG	AC	AT	GG	X_X	X_X
13._IMC_14	AA	GG	AA	TT	AG	CG	AA	CT	GT	AC	TT	GG	X_X	X_X
14._GC-03-030-3-09	AA	GG	AA	TT	AG	CG	AA	CT	GT	AC	TT	GG	X_X	X_X

Input profile: NA_26 RUQ_1230

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

1._NA_26

98.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4203 8 > FP

Dapeng Zhang, 2016

2._NA_26

98.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4203 7 > FP

Dapeng Zhang, 2016

3._NA_26

98.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4203 6 > FP

Dapeng Zhang, 2016

4._NA_26

98.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4203 4 > FP

Dapeng Zhang, 2016

5._NA_26

98.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4203 2

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

6._NA_26 GC-04-021-2-03

98.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

7._NA_26 GC-04-021-2-03

98.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4 > FP4

8._NA_26 GC-04-021-2-03

98.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6 > FP1

9._NA_26 GC-04-021-2-03

98.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7 > FP2

10._NA_26 GC-04-021-2-03

98.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 8

Notes: 8 > FP3

11._NA_26 RUQ_1230

97.9 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

12._NA_33

93.8 %
40 shared markers

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Cocoa Research Institute of Ghana (CRIG), Ghana

Location: M6 18, 19

Dapeng Zhang, 2016

13._IMC_14

90.3 %
36 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 3309 10

Dapeng Zhang, 2016

14._IMC_14 GC-03-030-3-09

90.3 %
36 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 10

Notes: 10

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1350	7	TcSNP1270	8	TcSNP1253	9	TcSNP1165	10	TcSNP1144
11	TcSNP1075	12	TcSNP1062	13	TcSNP1060	14	TcSNP998	15	TcSNP994
16	TcSNP953	17	TcSNP929	18	TcSNP917	19	TcSNP891	20	TcSNP872
21	TcSNP723	22	TcSNP645	23	TcSNP619	24	TcSNP591	25	TcSNP577
26	TcSNP560	27	TcSNP534	28	TcSNP529	29	TcSNP469	30	TcSNP429
31	TcSNP372	32	TcSNP242	33	TcSNP230	34	TcSNP226	35	TcSNP193
36	TcSNP151	37	TcSNP150	38	TcSNP144	39	TcSNP32	40	TcSNP25